sc-analyses.settings Class Reference

this class reads settings of the run and keeps them in its attributes if settings file in incorrect, the init method prints error and terminates application More...

Public Member Functions
def	read_cell_sets (self, cellset_file)
	read sets of cells later used to refer to them (to remove/color/superimpose etc...) More...
def	__init__ (self, settings_file, cellset_file)

Public Attributes
	cell_sets
	sets
	pcs
	parameters
	result_filename
	run_mode

Detailed Description

this class reads settings of the run and keeps them in its attributes if settings file in incorrect, the init method prints error and terminates application

Constructor & Destructor Documentation

__init__()

def sc-analyses.settings.__init__	(		self,
			settings_file,
			cellset_file
	)

Member Function Documentation

read_cell_sets()

def sc-analyses.settings.read_cell_sets	(		self,
			cellset_file
	)

read sets of cells later used to refer to them (to remove/color/superimpose etc...)

format:

cell_set_name <tab> cell <tab> cell ...

cell_set_name <tab> cell <tab> cell ...

Member Data Documentation

cell_sets

sc-analyses.settings.cell_sets

parameters

sc-analyses.settings.parameters

pcs

sc-analyses.settings.pcs

result_filename

sc-analyses.settings.result_filename

run_mode

sc-analyses.settings.run_mode

sets

sc-analyses.settings.sets

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The documentation for this class was generated from the following file:

• sc-analyses.py